WormBase Tree Display for CDS: PPA22669
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| PPA22669 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (29) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMA-S10-91.28 | ||
| DB_remark | PPA-UFD-3 protein; contains similarity to Pfam domains PF00994 (Probable molybdopterin binding domain), PF01507 (Phosphoadenosine phosphosulfate reductase family); contains similarity to Interpro domains IPR002500 (Phosphoadenosine phosphosulphate reductase), IPR036425 (MoaB/Mog-like domain superfamily), IPR001453 (MoaB/Mog domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00112223 | ||||
| Corresponding_transcript | PPA22669.1 | |||||
| Corresponding_protein | PP68046 | |||||
| Corresponding_oligo_set | GPL14372_Probes_15844 | |||||
| GPL14372_Probes_15845 | ||||||
| GPL14372_Probes_15846 | ||||||
| GPL14372_Probes_15847 | ||||||
| GPL14372_Probes_15848 | ||||||
| Matching_cDNA | FG104465 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_15844 | |||||
| GPL14372_Probes_15845 | ||||||
| GPL14372_Probes_15846 | ||||||
| GPL14372_Probes_15847 | ||||||
| GPL14372_Probes_15848 | ||||||
| RNASeq_FPKM | WBls:0000032 | 1.44029 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 8.50469 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMA-S10-91.28 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
