WormBase Tree Display for CDS: PPA22676
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PPA22676 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (16) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S10-91.41 | ||
DB_remark | contains similarity to Pfam domains PF00004 (ATPase family associated with various cellular activities (AAA)), PF12037 (ATPase family AAA domain-containing protein 3, N-terminal); contains similarity to Interpro domains IPR003959 (ATPase, AAA-type, core), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR021911 (ATPase family AAA domain-containing protein 3, N-terminal), IPR039188 (ATPase family AAA domain-containing protein 3), IPR003593 (AAA+ ATPase domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00112230 | ||||
Corresponding_transcript | PPA22676.1 | |||||
Corresponding_protein | PP58495 | |||||
Corresponding_oligo_set | GPL14372_Probes_64057 | |||||
GPL14372_Probes_64058 | ||||||
GPL14372_Probes_64059 | ||||||
GPL14372_Probes_64060 | ||||||
Matching_cDNA | FE939455 | Inferred_automatically | transcript_builder.pl | |||
FG105350 | Inferred_automatically | transcript_builder.pl | ||||
FG102482 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_64057 | |||||
GPL14372_Probes_64058 | ||||||
GPL14372_Probes_64059 | ||||||
GPL14372_Probes_64060 | ||||||
RNASeq_FPKM | WBls:0000032 | 5.70146 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 6.73347 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S10-91.41 | Curator_confirmed | WBPerson4055 | |||
Method | curated |