WormBase Tree Display for CDS: PPA22684
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PPA22684 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (15) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S10-92.65 | ||
TREEFAM | TREEFAM_ID | TF101053 | ||||
DB_remark | PPA-CDC-14 protein; contains similarity to Pfam domains PF00782 (Dual specificity phosphatase, catalytic domain), PF14671 (Dual specificity protein phosphatase, N-terminal half); contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR020422 (Dual specificity protein phosphatase domain), IPR029260 (Dual specificity/tyrosine protein phosphatase, N-terminal), IPR026070 (), IPR029021 (Protein-tyrosine phosphatase-like), IPR000340 (Dual specificity phosphatase, catalytic domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00112238 | ||||
Corresponding_transcript | PPA22684.1 | |||||
Corresponding_protein | PP69269 | |||||
Corresponding_oligo_set | GPL14372_Probes_64088 | |||||
GPL14372_Probes_64089 | ||||||
GPL14372_Probes_64090 | ||||||
GPL14372_Probes_64091 | ||||||
GPL14372_Probes_64092 | ||||||
GPL14372_Probes_64093 | ||||||
GPL14372_Probes_64094 | ||||||
GPL14372_Probes_64095 | ||||||
Matching_cDNA | FE937477 | Inferred_automatically | transcript_builder.pl | |||
FG096120 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_64088 | |||||
GPL14372_Probes_64089 | ||||||
GPL14372_Probes_64090 | ||||||
GPL14372_Probes_64091 | ||||||
GPL14372_Probes_64092 | ||||||
GPL14372_Probes_64093 | ||||||
GPL14372_Probes_64094 | ||||||
GPL14372_Probes_64095 | ||||||
RNASeq_FPKM | WBls:0000032 | 2.11035 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S10-92.65 | Curator_confirmed | WBPerson4055 | |||
Method | curated |