WormBase Tree Display for CDS: PPA22702
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| PPA22702 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (37) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S10-93.108 | ||
| DB_remark | PPA-CAM-1 protein; contains similarity to Pfam domains PF00051 (Kringle domain), PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain), PF07679 (Immunoglobulin I-set domain), PF07714 (Protein tyrosine and serine/threonine kinase); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR002486 (Nematode cuticle collagen, N-terminal), IPR003599 (Immunoglobulin subtype), IPR001245 (Serine-threonine/tyrosine-protein kinase, catalytic domain), IPR036957 (Zinc finger, PARP-type superfamily), IPR008160 (Collagen triple helix repeat), IPR036790 (Frizzled cysteine-rich domain superfamily), IPR003598 (Immunoglobulin subtype 2), IPR013098 (Immunoglobulin I-set), IPR013783 (Immunoglobulin-like fold), IPR036179 (Immunoglobulin-like domain superfamily), IPR000001 (Kringle), IPR013806 (Kringle-like fold), IPR038178 (Kringle superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00112256 | ||||
| Corresponding_transcript | PPA22702.1 | |||||
| Corresponding_protein | PP57068 | |||||
| Corresponding_oligo_set | GPL14372_Probes_15866 | |||||
| GPL14372_Probes_15867 | ||||||
| GPL14372_Probes_64165 | ||||||
| GPL14372_Probes_64169 | ||||||
| GPL14372_Probes_64170 | ||||||
| GPL14372_Probes_64171 | ||||||
| GPL14372_Probes_64172 | ||||||
| Matching_cDNA | FG096418 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_15866 | |||||
| GPL14372_Probes_15867 | ||||||
| GPL14372_Probes_64165 | ||||||
| GPL14372_Probes_64169 | ||||||
| GPL14372_Probes_64170 | ||||||
| GPL14372_Probes_64171 | ||||||
| GPL14372_Probes_64172 | ||||||
| RNASeq_FPKM | WBls:0000032 | 2.54014 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 18.9982 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S10-93.108 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
