WormBase Tree Display for CDS: PPA22720
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| PPA22720 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (11) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S10-93.28 | ||
| TREEFAM | TREEFAM_ID | TF105612 | ||||
| DB_remark | PPA-RPN-9 protein; contains similarity to Pfam domain PF01399 (PCI domain); contains similarity to Interpro domains IPR036390 (Winged helix DNA-binding domain superfamily), IPR035298 (26S Proteasome non-ATPase regulatory subunit 13), IPR000717 (Proteasome component (PCI) domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00112274 | ||||
| Corresponding_transcript | PPA22720.1 | |||||
| Corresponding_protein | PP70820 | |||||
| Corresponding_oligo_set | GPL14372_Probes_64235 | |||||
| GPL14372_Probes_64236 | ||||||
| GPL14372_Probes_64237 | ||||||
| GPL14372_Probes_64239 | ||||||
| Matching_cDNA | FG098590 | Inferred_automatically | transcript_builder.pl | |||
| FG098667 | Inferred_automatically | transcript_builder.pl | ||||
| FG097164 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_64235 | |||||
| GPL14372_Probes_64236 | ||||||
| GPL14372_Probes_64237 | ||||||
| GPL14372_Probes_64239 | ||||||
| RNASeq_FPKM | WBls:0000032 | 39.6927 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 89.8566 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S10-93.28 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
