WormBase Tree Display for CDS: PPA22726
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| PPA22726 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (21) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S10-93.10 | ||
| DB_remark | PPA-LAT-1 protein; contains similarity to Pfam domains PF00002 (7 transmembrane receptor (Secretin family)), PF01825 (GPCR proteolysis site, GPS, motif), PF02140 (Galactose binding lectin domain); contains similarity to Interpro domains IPR000832 (GPCR, family 2, secretin-like), IPR036445 (GPCR family 2, extracellular hormone receptor domain superfamily), IPR043159 (D-galactoside/L-rhamnose binding SUEL lectin domain superfamily), IPR000203 (GPS motif), IPR000922 (D-galactoside/L-rhamnose binding SUEL lectin domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00112280 | ||||
| Corresponding_transcript | PPA22726.1 | |||||
| Corresponding_protein | PP61081 | |||||
| Corresponding_oligo_set | GPL14372_Probes_15869 | |||||
| GPL14372_Probes_64265 | ||||||
| GPL14372_Probes_64266 | ||||||
| GPL14372_Probes_64267 | ||||||
| Microarray_results | GPL14372_Probes_15869 | |||||
| GPL14372_Probes_64265 | ||||||
| GPL14372_Probes_64266 | ||||||
| GPL14372_Probes_64267 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S10-93.10 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
