WormBase Tree Display for CDS: PPA22742

PPA22742 SMap: S_parent: Sequence: PPA_ChrII
  Structure: Source_exons: 1 105
      152 319
      364 535
      593 675
      721 804
      849 925
      972 1080
      1129 1216
      1263 1402
  DB_info: Database: pristionchus.org cds gene-UMM-S10-93.16
    DB_remark: contains similarity to Pfam domains PF00288 (GHMP kinases N terminal domain), PF18376 (Mevalonate 5-diphosphate decarboxylase C-terminal domain); contains similarity to Interpro domains IPR020568 (Ribosomal protein uS5 domain 2-type superfamily), IPR036554 (GHMP kinase, C-terminal domain superfamily), IPR014721 (Small ribosomal subunit protein uS5 domain 2-type fold, subgroup), IPR029765 (Diphosphomevalonate decarboxylase), IPR041431 (Mvd1, C-terminal), IPR005935 (Diphosphomevalonate/phosphomevalonate decarboxylase), IPR006204 (GHMP kinase N-terminal domain)
  Origin: From_laboratory: RS
    Species: Pristionchus pacificus
  Properties: Coding: CDS
      CDS_predicted_by: pristionchus.org
      Prediction_status: Partially_confirmed
  Visible: Gene: WBGene00112296
    Corresponding_transcript: PPA22742.1
    Corresponding_protein: PP53986
    Corresponding_oligo_set: GPL14372_Probes_64321
      GPL14372_Probes_64322
      GPL14372_Probes_64323
      GPL14372_Probes_64324
    Matching_cDNA: FG103433 Inferred_automatically: transcript_builder.pl
      FE940322 Inferred_automatically: transcript_builder.pl
    Microarray_results: GPL14372_Probes_64321
      GPL14372_Probes_64322
      GPL14372_Probes_64323
      GPL14372_Probes_64324
    RNASeq_FPKM: WBls:0000032 33.1792 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 43.1074 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Remark: [171116 mh6] renamed from gene-UMM-S10-93.16 Curator_confirmed: WBPerson4055
  Method: curated