WormBase Tree Display for CDS: PPA22766
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PPA22766 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (47) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S421-1.74 | ||
DB_remark | PPA-NURF-1 protein; contains similarity to Pfam domain PF02791 (DDT domain); contains similarity to Interpro domains IPR018501 (DDT domain), IPR011011 (Zinc finger, FYVE/PHD-type), IPR001965 (Zinc finger, PHD-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR038028 (Nucleosome-remodeling factor subunit BPTF) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00112320 | ||||
Corresponding_transcript | PPA22766.1 | |||||
Corresponding_protein | PP58320 | |||||
Corresponding_oligo_set (11) | ||||||
Microarray_results (11) | ||||||
RNASeq_FPKM | WBls:0000032 | 5.60887 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 7.35952 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S421-1.74 | Curator_confirmed | WBPerson4055 | |||
Method | curated |