WormBase Tree Display for CDS: PPA22788
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PPA22788 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (37) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S421-1.78 | ||
TREEFAM | TREEFAM_ID | TF300825 | ||||
DB_remark | PPA-IMB-2 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain), PF02985 (HEAT repeat), PF03810 (Importin-beta N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000357 (HEAT repeat), IPR001494 (Importin-beta, N-terminal domain), IPR040122 (Importin beta family), IPR008160 (Collagen triple helix repeat), IPR011989 (Armadillo-like helical), IPR016024 (Armadillo-type fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00112342 | ||||
Corresponding_transcript | PPA22788.1 | |||||
Corresponding_protein | PP53202 | |||||
Corresponding_oligo_set | GPL14372_Probes_64524 | |||||
GPL14372_Probes_64525 | ||||||
GPL14372_Probes_64526 | ||||||
GPL14372_Probes_64527 | ||||||
Matching_cDNA | AW052434 | Inferred_automatically | transcript_builder.pl | |||
FE941458 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_64524 | |||||
GPL14372_Probes_64525 | ||||||
GPL14372_Probes_64526 | ||||||
GPL14372_Probes_64527 | ||||||
RNASeq_FPKM | WBls:0000032 | 0.918992 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 26.0464 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S421-1.78 | Curator_confirmed | WBPerson4055 | |||
Method | curated |