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WormBase Tree Display for CDS: PPA22788

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Name Class

PPA22788SMapS_parentSequencePPA_ChrII
StructureSource_exons (37)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S421-1.78
TREEFAMTREEFAM_IDTF300825
DB_remarkPPA-IMB-2 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain), PF02985 (HEAT repeat), PF03810 (Importin-beta N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR000357 (HEAT repeat), IPR001494 (Importin-beta, N-terminal domain), IPR040122 (Importin beta family), IPR008160 (Collagen triple helix repeat), IPR011989 (Armadillo-like helical), IPR016024 (Armadillo-type fold)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00112342
Corresponding_transcriptPPA22788.1
Corresponding_proteinPP53202
Corresponding_oligo_setGPL14372_Probes_64524
GPL14372_Probes_64525
GPL14372_Probes_64526
GPL14372_Probes_64527
Matching_cDNAAW052434Inferred_automaticallytranscript_builder.pl
FE941458Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_64524
GPL14372_Probes_64525
GPL14372_Probes_64526
GPL14372_Probes_64527
RNASeq_FPKMWBls:00000320.918992From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010126.0464From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S421-1.78Curator_confirmedWBPerson4055
Methodcurated