WormBase Tree Display for CDS: PPA22835
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| PPA22835 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrII | |||
| Structure | Source_exons (35) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S421-2.135 | ||
| DB_remark | contains similarity to Pfam domains PF01477 (PLAT/LH2 domain), PF02141 (DENN (AEX-3) domain), PF02759 (RUN domain), PF03455 (dDENN domain), PF03456 (uDENN domain); contains similarity to Interpro domains IPR005112 (dDENN domain), IPR037213 (RUN domain superfamily), IPR001024 (PLAT/LH2 domain), IPR004012 (RUN domain), IPR005113 (uDENN domain), IPR043153 (DENN domain, C-terminal lobe), IPR036392 (PLAT/LH2 domain superfamily), IPR001194 (cDENN domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00112389 | ||||
| Corresponding_transcript | PPA22835.1 | |||||
| Corresponding_protein | PP75244 | |||||
| Corresponding_oligo_set | GPL14372_Probes_64760 | |||||
| GPL14372_Probes_64761 | ||||||
| GPL14372_Probes_64762 | ||||||
| Microarray_results | GPL14372_Probes_64760 | |||||
| GPL14372_Probes_64761 | ||||||
| GPL14372_Probes_64762 | ||||||
| RNASeq_FPKM | WBls:0000032 | 3.89366 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0.91962 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 11 Sep 2019 14:11:55 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S421-2.135 | Curator_confirmed | WBPerson4055 | |||
| [190911 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
