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WormBase Tree Display for CDS: PPA22921

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Name Class

PPA22921SMapS_parentSequencePPA_ChrI
StructureSource_exons (52)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S2844-45.21
DB_remarkcontains similarity to Pfam domains PF03098 (Animal haem peroxidase), PF07679 (Immunoglobulin I-set domain), PF13855 (Leucine rich repeat), PF13927 (Immunoglobulin domain); contains similarity to Interpro domains IPR000483 (Cysteine-rich flanking region, C-terminal), IPR001611 (Leucine-rich repeat), IPR019791 (Haem peroxidase, animal-type), IPR003591 (Leucine-rich repeat, typical subtype), IPR003599 (Immunoglobulin subtype), IPR003598 (Immunoglobulin subtype 2), IPR037120 (Haem peroxidase domain superfamily, animal type), IPR013098 (Immunoglobulin I-set), IPR010255 (Haem peroxidase superfamily), IPR013783 (Immunoglobulin-like fold), IPR036179 (Immunoglobulin-like domain superfamily), IPR032675 (Leucine-rich repeat domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPredicted
VisibleGeneWBGene00112475
Corresponding_transcriptPPA22921.1
Corresponding_proteinPP71149
Corresponding_oligo_setGPL14372_Probes_33456
GPL14372_Probes_33457
GPL14372_Probes_91277
GPL14372_Probes_91278
GPL14372_Probes_91279
GPL14372_Probes_91280
Microarray_resultsGPL14372_Probes_33456
GPL14372_Probes_33457
GPL14372_Probes_91277
GPL14372_Probes_91278
GPL14372_Probes_91279
GPL14372_Probes_91280
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S2844-45.21Curator_confirmedWBPerson4055
Methodcurated