WormBase Tree Display for CDS: PPA22921
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PPA22921 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (52) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2844-45.21 | ||
DB_remark | contains similarity to Pfam domains PF03098 (Animal haem peroxidase), PF07679 (Immunoglobulin I-set domain), PF13855 (Leucine rich repeat), PF13927 (Immunoglobulin domain); contains similarity to Interpro domains IPR000483 (Cysteine-rich flanking region, C-terminal), IPR001611 (Leucine-rich repeat), IPR019791 (Haem peroxidase, animal-type), IPR003591 (Leucine-rich repeat, typical subtype), IPR003599 (Immunoglobulin subtype), IPR003598 (Immunoglobulin subtype 2), IPR037120 (Haem peroxidase domain superfamily, animal type), IPR013098 (Immunoglobulin I-set), IPR010255 (Haem peroxidase superfamily), IPR013783 (Immunoglobulin-like fold), IPR036179 (Immunoglobulin-like domain superfamily), IPR032675 (Leucine-rich repeat domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00112475 | ||||
Corresponding_transcript | PPA22921.1 | |||||
Corresponding_protein | PP71149 | |||||
Corresponding_oligo_set | GPL14372_Probes_33456 | |||||
GPL14372_Probes_33457 | ||||||
GPL14372_Probes_91277 | ||||||
GPL14372_Probes_91278 | ||||||
GPL14372_Probes_91279 | ||||||
GPL14372_Probes_91280 | ||||||
Microarray_results | GPL14372_Probes_33456 | |||||
GPL14372_Probes_33457 | ||||||
GPL14372_Probes_91277 | ||||||
GPL14372_Probes_91278 | ||||||
GPL14372_Probes_91279 | ||||||
GPL14372_Probes_91280 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2844-45.21 | Curator_confirmed | WBPerson4055 | |||
Method | curated |