WormBase Tree Display for CDS: PPA23178
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PPA23178 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 120 | |||
820 | 912 | |||||
1200 | 1270 | |||||
1613 | 1676 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2840-61.8 | ||
TREEFAM | TREEFAM_ID | TF315773 | ||||
DB_remark | contains similarity to Pfam domain PF01060 (Transthyretin-like family); contains similarity to Interpro domain IPR001534 (Transthyretin-like) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00112732 | ||||
Corresponding_transcript | PPA23178.1 | |||||
Corresponding_protein | PP59684 | |||||
Corresponding_oligo_set | GPL14372_Probes_76184 | |||||
Matching_cDNA | FE932785 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_76184 | |||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 36.8056 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S2840-61.8 | Curator_confirmed | WBPerson4055 | |||
Method | curated |