WormBase Tree Display for CDS: PPA23314
expand all nodes | collapse all nodes | view schema
PPA23314 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (19) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-8.43 | ||
DB_remark | PPA-EGL-10 protein; contains similarity to Pfam domains PF00610 (Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)), PF00615 (Regulator of G protein signaling domain), PF00631 (GGL domain), PF18148 (Regulator of G-protein signalling DHEX domain); contains similarity to Interpro domains IPR036305 (RGS domain superfamily), IPR036284 (G-protein gamma-like domain superfamily), IPR034483 (Regulator of G-protein signalling Egl-10, RGS domain), IPR024066 (RGS, subdomain 1/3), IPR040759 (Regulator of G-protein signalling, DHEX domain), IPR036390 (Winged helix DNA-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR016137 (RGS domain), IPR015898 (G-protein gamma-like domain), IPR000591 (DEP domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00112868 | ||||
Corresponding_transcript | PPA23314.1 | |||||
Corresponding_protein | PP70810 | |||||
Corresponding_oligo_set | GPL14372_Probes_176 | |||||
GPL14372_Probes_177 | ||||||
GPL14372_Probes_178 | ||||||
GPL14372_Probes_179 | ||||||
Microarray_results | GPL14372_Probes_176 | |||||
GPL14372_Probes_177 | ||||||
GPL14372_Probes_178 | ||||||
GPL14372_Probes_179 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S7-8.43 | Curator_confirmed | WBPerson4055 | |||
Method | curated |