WormBase Tree Display for CDS: PPA23347
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PPA23347 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 81 | |||
400 | 453 | |||||
623 | 682 | |||||
729 | 776 | |||||
917 | 969 | |||||
1111 | 1159 | |||||
1206 | 1286 | |||||
1548 | 1649 | |||||
2058 | 2120 | |||||
2395 | 2466 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S296-6.42 | ||
DB_remark | contains similarity to Pfam domain PF00635 (MSP (Major sperm protein) domain); contains similarity to Interpro domains IPR000535 (Major sperm protein (MSP) domain), IPR008962 (PapD-like superfamily), IPR013783 (Immunoglobulin-like fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00112901 | ||||
Corresponding_transcript | PPA23347.1 | |||||
Corresponding_protein | PP57963 | |||||
Corresponding_oligo_set | GPL14372_Probes_82567 | |||||
GPL14372_Probes_82568 | ||||||
Microarray_results | GPL14372_Probes_82567 | |||||
GPL14372_Probes_82568 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S296-6.42 | Curator_confirmed | WBPerson4055 | |||
Method | curated |