WormBase Tree Display for CDS: PPA23350
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PPA23350 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 80 | |||
355 | 427 | |||||
885 | 956 | |||||
1245 | 1355 | |||||
1547 | 1585 | |||||
2009 | 2113 | |||||
2528 | 2596 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S296-6.64 | ||
TREEFAM | TREEFAM_ID | TF319745 | ||||
DB_remark | contains similarity to Pfam domain PF00782 (Dual specificity phosphatase, catalytic domain); contains similarity to Interpro domains IPR020422 (Dual specificity protein phosphatase domain), IPR042165 (Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1), IPR029021 (Protein-tyrosine phosphatase-like), IPR000340 (Dual specificity phosphatase, catalytic domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00112904 | ||||
Corresponding_transcript | PPA23350.1 | |||||
Corresponding_protein | PP23736 | |||||
Corresponding_oligo_set | GPL14372_Probes_82578 | |||||
GPL14372_Probes_82580 | ||||||
GPL14372_Probes_82581 | ||||||
Microarray_results | GPL14372_Probes_82578 | |||||
GPL14372_Probes_82580 | ||||||
GPL14372_Probes_82581 | ||||||
RNASeq_FPKM | WBls:0000032 | 65.2623 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 88.1288 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S296-6.64 | Curator_confirmed | WBPerson4055 | |||
Method | curated |