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WormBase Tree Display for CDS: PPA23384

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Name Class

PPA23384SMapS_parentSequencePPA_ChrII
StructureSource_exons (49)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S296-4.18
TREEFAMTREEFAM_IDTF103033
DB_remarkPPA-RPOA-1 protein; contains similarity to Pfam domains PF00623 (RNA polymerase Rpb1, domain 2), PF04983 (RNA polymerase Rpb1, domain 3), PF04997 (RNA polymerase Rpb1, domain 1), PF04998 (RNA polymerase Rpb1, domain 5), PF05000 (RNA polymerase Rpb1, domain 4); contains similarity to Interpro domains IPR006592 (RNA polymerase, N-terminal), IPR007080 (RNA polymerase Rpb1, domain 1), IPR015699 (DNA-directed RNA pol I, largest subunit, N-terminal domain), IPR007083 (RNA polymerase Rpb1, domain 4), IPR000722 (RNA polymerase, alpha subunit), IPR042102 (RNA polymerase Rpb1, domain 3 superfamily), IPR007066 (RNA polymerase Rpb1, domain 3), IPR038120 (RNA polymerase Rpb1, funnel domain superfamily), IPR007081 (RNA polymerase Rpb1, domain 5)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00112938
Corresponding_transcriptPPA23384.1
Corresponding_proteinPP74038
Corresponding_oligo_setGPL14372_Probes_82668
GPL14372_Probes_82670
GPL14372_Probes_82671
Matching_cDNAFE941476Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_82668
GPL14372_Probes_82670
GPL14372_Probes_82671
RNASeq_FPKMWBls:00000320.64602From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001016.10313From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S296-4.18Curator_confirmedWBPerson4055
Methodcurated