WormBase Tree Display for CDS: PPA23398
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PPA23398 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (50) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S296-3.53 | ||
DB_remark | contains similarity to Pfam domains PF00856 (SET domain), PF03114 (BAR domain); contains similarity to Interpro domains IPR001214 (SET domain), IPR027267 (AH/BAR domain superfamily), IPR004148 (BAR domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00112952 | ||||
Corresponding_transcript | PPA23398.1 | |||||
Corresponding_protein | PP65739 | |||||
Corresponding_oligo_set (13) | ||||||
Matching_cDNA | AW052313 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results (13) | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 2.73905 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S296-3.53 | Curator_confirmed | WBPerson4055 | |||
Method | curated |