WormBase Tree Display for CDS: PPA23511
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| PPA23511 | SMap | S_parent | Sequence | PPA_ChrX | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (29) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S344-5.33 | ||
| TREEFAM | TREEFAM_ID | TF317274 | ||||
| DB_remark | PPA-APL-1 protein; contains similarity to Pfam domains PF02177 (Amyloid A4 N-terminal heparin-binding), PF10515 (Beta-amyloid precursor protein C-terminus), PF12924 (Copper-binding of amyloid precursor, CuBD), PF12925 (E2 domain of amyloid precursor protein); contains similarity to Interpro domains IPR036669 (Amyloidogenic glycoprotein, copper-binding domain superfamily), IPR011178 (Amyloidogenic glycoprotein, copper-binding), IPR036176 (E2 domain superfamily), IPR019543 (Beta-amyloid precursor protein C-terminal), IPR024329 (Amyloidogenic glycoprotein, E2 domain), IPR008154 (Amyloidogenic glycoprotein, extracellular), IPR036454 (Amyloidogenic glycoprotein, heparin-binding domain superfamily), IPR008155 (Amyloidogenic glycoprotein), IPR015849 (Amyloidogenic glycoprotein, heparin-binding) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00113065 | ||||
| Corresponding_transcript | PPA23511.1 | |||||
| Corresponding_protein | PP55232 | |||||
| Corresponding_oligo_set | GPL14372_Probes_26113 | |||||
| GPL14372_Probes_26115 | ||||||
| GPL14372_Probes_80685 | ||||||
| GPL14372_Probes_80686 | ||||||
| GPL14372_Probes_80687 | ||||||
| GPL14372_Probes_80688 | ||||||
| GPL14372_Probes_80689 | ||||||
| GPL14372_Probes_80690 | ||||||
| Matching_cDNA | FE939388 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_26113 | |||||
| GPL14372_Probes_26115 | ||||||
| GPL14372_Probes_80685 | ||||||
| GPL14372_Probes_80686 | ||||||
| GPL14372_Probes_80687 | ||||||
| GPL14372_Probes_80688 | ||||||
| GPL14372_Probes_80689 | ||||||
| GPL14372_Probes_80690 | ||||||
| RNASeq_FPKM | WBls:0000032 | 8.63754 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 155.923 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S344-5.33 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
