WormBase Tree Display for CDS: PPA23558
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PPA23558 | SMap | S_parent | Sequence | PPA_ChrX | ||
---|---|---|---|---|---|---|
Structure | Source_exons (54) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S344-3.63 | ||
DB_remark | contains similarity to Pfam domains PF00083 (Sugar (and other) transporter), PF07690 (Major Facilitator Superfamily); contains similarity to Interpro domains IPR011701 (Major facilitator superfamily), IPR036423 (Superoxide dismutase-like, copper/zinc binding domain superfamily), IPR036259 (MFS transporter superfamily), IPR005828 (Major facilitator, sugar transporter-like) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00113112 | ||||
Corresponding_transcript | PPA23558.1 | |||||
Corresponding_protein | PP55702 | |||||
Corresponding_oligo_set (11) | ||||||
Matching_cDNA | EB183667 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results (11) | ||||||
RNASeq_FPKM | WBls:0000032 | 2.35771 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 1.39212 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S344-3.63 | Curator_confirmed | WBPerson4055 | |||
Method | curated |