WormBase Tree Display for CDS: PPA23568
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| PPA23568 | SMap | S_parent | Sequence | PPA_ChrX | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 57 | |||
| 504 | 689 | |||||
| 931 | 1041 | |||||
| 1107 | 1203 | |||||
| 2786 | 2903 | |||||
| 3068 | 3206 | |||||
| 3789 | 3932 | |||||
| 4086 | 4217 | |||||
| 5151 | 5222 | |||||
| 5478 | 5534 | |||||
| 5606 | 5679 | |||||
| 7685 | 7894 | |||||
| 8807 | 9179 | |||||
| 9554 | 9724 | |||||
| 9770 | 9852 | |||||
| 9900 | 9990 | |||||
| 10034 | 10148 | |||||
| 11001 | 11189 | |||||
| 13065 | 13100 | |||||
| 14038 | 14109 | |||||
| 14170 | 14243 | |||||
| 14463 | 14565 | |||||
| 15146 | 15237 | |||||
| 15292 | 15354 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMA-S344-3.38 | ||
| DB_remark | PPA-UNC-6 protein; contains similarity to Pfam domains PF00053 (Laminin EGF domain), PF00055 (Laminin N-terminal (Domain VI)), PF00397 (WW domain), PF01759 (UNC-6/NTR/C345C module); contains similarity to Interpro domains IPR008993 (Tissue inhibitor of metalloproteinases-like, OB-fold), IPR008211 (Laminin, N-terminal), IPR002049 (Laminin-type EGF domain), IPR001202 (WW domain), IPR038684 (), IPR036020 (WW domain superfamily), IPR018933 (Netrin module, non-TIMP type) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00113122 | ||||
| Corresponding_transcript | PPA23568.1 | |||||
| Corresponding_protein | PP57265 | |||||
| Corresponding_oligo_set | GPL14372_Probes_26163 | |||||
| GPL14372_Probes_26164 | ||||||
| GPL14372_Probes_26165 | ||||||
| GPL14372_Probes_26167 | ||||||
| GPL14372_Probes_34909 | ||||||
| GPL14372_Probes_34910 | ||||||
| GPL14372_Probes_80847 | ||||||
| GPL14372_Probes_80854 | ||||||
| GPL14372_Probes_80855 | ||||||
| GPL14372_Probes_80862 | ||||||
| GPL14372_Probes_80863 | ||||||
| GPL14372_Probes_80864 | ||||||
| Microarray_results | GPL14372_Probes_26163 | |||||
| GPL14372_Probes_26164 | ||||||
| GPL14372_Probes_26165 | ||||||
| GPL14372_Probes_26167 | ||||||
| GPL14372_Probes_34909 | ||||||
| GPL14372_Probes_34910 | ||||||
| GPL14372_Probes_80847 | ||||||
| GPL14372_Probes_80854 | ||||||
| GPL14372_Probes_80855 | ||||||
| GPL14372_Probes_80862 | ||||||
| GPL14372_Probes_80863 | ||||||
| GPL14372_Probes_80864 | ||||||
| RNASeq_FPKM | WBls:0000032 | 1.21582 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 1.43583 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMA-S344-3.38 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
