WormBase Tree Display for CDS: PPA23631
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| PPA23631 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (38) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S41-6.9 | ||
| TREEFAM | TREEFAM_ID | TF300331 | ||||
| DB_remark | PPA-CATP-5 protein; contains similarity to Pfam domains PF00122 (E1-E2 ATPase), PF00690 (Cation transporter/ATPase, N-terminus), PF00702 (haloacid dehalogenase-like hydrolase), PF12409 (P5-type ATPase cation transporter); contains similarity to Interpro domains IPR023298 (P-type ATPase, transmembrane domain superfamily), IPR036412 (HAD-like superfamily), IPR008250 (P-type ATPase, A domain superfamily), IPR004014 (Cation-transporting P-type ATPase, N-terminal), IPR006544 (P-type ATPase, subfamily V), IPR001757 (P-type ATPase), IPR023299 (P-type ATPase, cytoplasmic domain N) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00113185 | ||||
| Corresponding_transcript | PPA23631.1 | |||||
| Corresponding_protein | PP70127 | |||||
| Corresponding_oligo_set | GPL14372_Probes_29601 | |||||
| GPL14372_Probes_29602 | ||||||
| GPL14372_Probes_29603 | ||||||
| GPL14372_Probes_29604 | ||||||
| GPL14372_Probes_29605 | ||||||
| Microarray_results | GPL14372_Probes_29601 | |||||
| GPL14372_Probes_29602 | ||||||
| GPL14372_Probes_29603 | ||||||
| GPL14372_Probes_29604 | ||||||
| GPL14372_Probes_29605 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 1.13873 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S41-6.9 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
