WormBase Tree Display for CDS: PPA23642
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PPA23642 | SMap | S_parent | Sequence | PPA_ChrV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 126 | |||
661 | 717 | |||||
913 | 999 | |||||
1046 | 1212 | |||||
1583 | 1661 | |||||
2021 | 2161 | |||||
2257 | 2361 | |||||
2556 | 2614 | |||||
2663 | 2765 | |||||
2855 | 2992 | |||||
3053 | 3151 | |||||
3197 | 3344 | |||||
3395 | 3510 | |||||
3601 | 3792 | |||||
3840 | 3968 | |||||
4017 | 4094 | |||||
4142 | 4219 | |||||
4267 | 4716 | |||||
4802 | 4897 | |||||
4950 | 5006 | |||||
5052 | 5147 | |||||
5206 | 5232 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S13-5.49 | ||
TREEFAM | TREEFAM_ID | TF336753 | ||||
DB_remark | PPA-UNC-15 protein; contains similarity to Pfam domain PF01576 (Myosin tail); contains similarity to Interpro domain IPR002928 (Myosin tail) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00113196 | ||||
Corresponding_transcript | PPA23642.1 | |||||
Corresponding_protein | PP57157 | |||||
Corresponding_oligo_set | GPL14372_Probes_48014 | |||||
Matching_cDNA | AW097402 | Inferred_automatically | transcript_builder.pl | |||
AW114327 | Inferred_automatically | transcript_builder.pl | ||||
AW097853 | Inferred_automatically | transcript_builder.pl | ||||
FE931737 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_48014 | |||||
RNASeq_FPKM | WBls:0000032 | 1.33162 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S13-5.49 | Curator_confirmed | WBPerson4055 | |||
Method | curated |