WormBase Tree Display for CDS: PPA23728
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| PPA23728 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (13) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-5.17 | ||
| DB_remark | contains similarity to Pfam domain PF00105 (Zinc finger, C4 type (two domains)); contains similarity to Interpro domains IPR013088 (Zinc finger, NHR/GATA-type), IPR001628 (Zinc finger, nuclear hormone receptor-type), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00113282 | ||||
| Corresponding_transcript | PPA23728.1 | |||||
| Corresponding_protein | PP64154 | |||||
| Corresponding_oligo_set | GPL14372_Probes_17939 | |||||
| GPL14372_Probes_17940 | ||||||
| GPL14372_Probes_17941 | ||||||
| GPL14372_Probes_68831 | ||||||
| GPL14372_Probes_68832 | ||||||
| GPL14372_Probes_68833 | ||||||
| GPL14372_Probes_68834 | ||||||
| GPL14372_Probes_68836 | ||||||
| Microarray_results | GPL14372_Probes_17939 | |||||
| GPL14372_Probes_17940 | ||||||
| GPL14372_Probes_17941 | ||||||
| GPL14372_Probes_68831 | ||||||
| GPL14372_Probes_68832 | ||||||
| GPL14372_Probes_68833 | ||||||
| GPL14372_Probes_68834 | ||||||
| GPL14372_Probes_68836 | ||||||
| RNASeq_FPKM | WBls:0000032 | 4.04368 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 4.77565 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S57-5.17 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
