WormBase Tree Display for CDS: PPA23732
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PPA23732 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (85) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-5.6 | ||
DB_remark | contains similarity to Pfam domain PF00443 (Ubiquitin carboxyl-terminal hydrolase); contains similarity to Interpro domains IPR038765 (Papain-like cysteine peptidase superfamily), IPR001394 (Peptidase C19, ubiquitin carboxyl-terminal hydrolase), IPR016024 (Armadillo-type fold) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00113286 | ||||
Corresponding_transcript | PPA23732.1 | |||||
Corresponding_protein | PP61028 | |||||
Corresponding_oligo_set (14) | ||||||
Microarray_results (14) | ||||||
RNASeq_FPKM | WBls:0000032 | 1.52356 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-5.6 | Curator_confirmed | WBPerson4055 | |||
Method | curated |