WormBase Tree Display for CDS: PPA23751
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| PPA23751 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (40) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-4.1 | ||
| DB_remark | PPA-LGC-4 protein; contains similarity to Pfam domains PF00375 (Sodium:dicarboxylate symporter family), PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR001991 (Sodium:dicarboxylate symporter), IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR036458 (Sodium:dicarboxylate symporter superfamily), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00113305 | ||||
| Corresponding_transcript | PPA23751.1 | |||||
| Corresponding_protein | PP60186 | |||||
| Corresponding_oligo_set (13) | ||||||
| Microarray_results (13) | ||||||
| RNASeq_FPKM | WBls:0000032 | 6.3356 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 1.06884 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S57-4.1 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
