WormBase Tree Display for CDS: PPA23754
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| PPA23754 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (33) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S57-4.15 | ||
| TREEFAM | TREEFAM_ID | TF326187 | ||||
| DB_remark | PPA-NLG-1 protein; contains similarity to Pfam domains PF00135 (Carboxylesterase family), PF10328 (Serpentine type 7TM GPCR chemoreceptor Srx); contains similarity to Interpro domains IPR029058 (Alpha/Beta hydrolase fold), IPR019430 (7TM GPCR, serpentine receptor class x (Srx)), IPR002018 (Carboxylesterase, type B), IPR000276 (G protein-coupled receptor, rhodopsin-like) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00113308 | ||||
| Corresponding_transcript | PPA23754.1 | |||||
| Corresponding_protein | PP69866 | |||||
| Corresponding_oligo_set | GPL14372_Probes_78778 | |||||
| GPL14372_Probes_78779 | ||||||
| GPL14372_Probes_78780 | ||||||
| GPL14372_Probes_78781 | ||||||
| GPL14372_Probes_78782 | ||||||
| GPL14372_Probes_78783 | ||||||
| Matching_cDNA | BM320832 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_78778 | |||||
| GPL14372_Probes_78779 | ||||||
| GPL14372_Probes_78780 | ||||||
| GPL14372_Probes_78781 | ||||||
| GPL14372_Probes_78782 | ||||||
| GPL14372_Probes_78783 | ||||||
| RNASeq_FPKM | WBls:0000032 | 3.67283 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 1.08434 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S57-4.15 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
