WormBase Tree Display for CDS: PPA23768
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PPA23768 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (22) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S57-4.89 | ||
TREEFAM | TREEFAM_ID | TF300672 | ||||
DB_remark | PPA-ACOX-1.1 protein; contains similarity to Pfam domains PF01756 (Acyl-CoA oxidase), PF02770 (Acyl-CoA dehydrogenase, middle domain), PF14749 (Acyl-coenzyme A oxidase N-terminal); contains similarity to Interpro domains IPR002655 (Acyl-CoA oxidase, C-terminal), IPR006091 (Acyl-CoA oxidase/dehydrogenase, middle domain), IPR029320 (Acyl-coenzyme A oxidase, N-terminal), IPR036250 (Acyl-CoA dehydrogenase-like, C-terminal), IPR037069 (Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily), IPR012258 (Acyl-CoA oxidase), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00113322 | ||||
Corresponding_transcript | PPA23768.1 | |||||
Corresponding_protein | PP65280 | |||||
Corresponding_oligo_set | GPL14372_Probes_73845 | |||||
GPL14372_Probes_78745 | ||||||
GPL14372_Probes_78746 | ||||||
Matching_cDNA | BI500085 | Inferred_automatically | transcript_builder.pl | |||
FE932509 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_73845 | |||||
GPL14372_Probes_78745 | ||||||
GPL14372_Probes_78746 | ||||||
RNASeq_FPKM | WBls:0000032 | 12.1456 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 53.2774 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S57-4.89 | Curator_confirmed | WBPerson4055 | |||
Method | curated |