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WormBase Tree Display for CDS: PPA23768

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Name Class

PPA23768SMapS_parentSequencePPA_ChrI
StructureSource_exons (22)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S57-4.89
TREEFAMTREEFAM_IDTF300672
DB_remarkPPA-ACOX-1.1 protein; contains similarity to Pfam domains PF01756 (Acyl-CoA oxidase), PF02770 (Acyl-CoA dehydrogenase, middle domain), PF14749 (Acyl-coenzyme A oxidase N-terminal); contains similarity to Interpro domains IPR002655 (Acyl-CoA oxidase, C-terminal), IPR006091 (Acyl-CoA oxidase/dehydrogenase, middle domain), IPR029320 (Acyl-coenzyme A oxidase, N-terminal), IPR036250 (Acyl-CoA dehydrogenase-like, C-terminal), IPR037069 (Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily), IPR012258 (Acyl-CoA oxidase), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00113322
Corresponding_transcriptPPA23768.1
Corresponding_proteinPP65280
Corresponding_oligo_setGPL14372_Probes_73845
GPL14372_Probes_78745
GPL14372_Probes_78746
Matching_cDNABI500085Inferred_automaticallytranscript_builder.pl
FE932509Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_73845
GPL14372_Probes_78745
GPL14372_Probes_78746
RNASeq_FPKMWBls:000003212.1456From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010153.2774From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S57-4.89Curator_confirmedWBPerson4055
Methodcurated