WormBase Tree Display for CDS: PPA23860
expand all nodes | collapse all nodes | view schema
PPA23860 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 90 | |||
172 | 270 | |||||
311 | 362 | |||||
412 | 461 | |||||
602 | 654 | |||||
845 | 980 | |||||
1582 | 1723 | |||||
1829 | 1962 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S245-1.32 | ||
DB_remark | contains similarity to Pfam domain PF00651 (BTB/POZ domain); contains similarity to Interpro domains IPR000210 (BTB/POZ domain), IPR011333 (SKP1/BTB/POZ domain superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00113414 | ||||
Corresponding_transcript | PPA23860.1 | |||||
Corresponding_protein | PP60621 | |||||
Corresponding_oligo_set | GPL14372_Probes_10056 | |||||
GPL14372_Probes_10057 | ||||||
GPL14372_Probes_10058 | ||||||
GPL14372_Probes_10061 | ||||||
Microarray_results | GPL14372_Probes_10056 | |||||
GPL14372_Probes_10057 | ||||||
GPL14372_Probes_10058 | ||||||
GPL14372_Probes_10061 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S245-1.32 | Curator_confirmed | WBPerson4055 | |||
Method | curated |