WormBase Tree Display for CDS: PPA23872
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| PPA23872 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 99 | |||
| 313 | 390 | |||||
| 450 | 520 | |||||
| 725 | 842 | |||||
| 1019 | 1102 | |||||
| 1263 | 1370 | |||||
| 1515 | 1565 | |||||
| 1687 | 1782 | |||||
| 1969 | 2066 | |||||
| 2255 | 2339 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S245-2.45 | ||
| TREEFAM | TREEFAM_ID | TF300481 | ||||
| DB_remark | PPA-ALH-6 protein; contains similarity to Interpro domains IPR019734 (Tetratricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR039856 (ER membrane protein complex subunit 2-like) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00113426 | ||||
| Corresponding_transcript | PPA23872.1 | |||||
| Corresponding_protein | PP68259 | |||||
| Corresponding_oligo_set | GPL14372_Probes_85522 | |||||
| GPL14372_Probes_85523 | ||||||
| GPL14372_Probes_85526 | ||||||
| Matching_cDNA | FG103910 | Inferred_automatically | transcript_builder.pl | |||
| FG105565 | Inferred_automatically | transcript_builder.pl | ||||
| FG106333 | Inferred_automatically | transcript_builder.pl | ||||
| FG106178 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_85522 | |||||
| GPL14372_Probes_85523 | ||||||
| GPL14372_Probes_85526 | ||||||
| RNASeq_FPKM | WBls:0000032 | 9.42409 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 11.132 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S245-2.45 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
