WormBase Tree Display for CDS: PPA23895
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| PPA23895 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (15) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S245-3.50 | ||
| DB_remark | PPA-GBH-2 protein; contains similarity to Pfam domains PF02668 (Taurine catabolism dioxygenase TauD, TfdA family), PF06155 (Gamma-butyrobetaine hydroxylase-like, N-terminal); contains similarity to Interpro domains IPR042098 (Taurine dioxygenase TauD-like superfamily), IPR003819 (TauD/TfdA-like domain), IPR010376 (Gamma-butyrobetaine hydroxylase-like, N-terminal), IPR012776 (Trimethyllysine dioxygenase), IPR038492 (GBBH-like, N-terminal domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00113449 | ||||
| Corresponding_transcript | PPA23895.1 | |||||
| Corresponding_protein | PP62513 | |||||
| Corresponding_oligo_set | GPL14372_Probes_29426 | |||||
| GPL14372_Probes_29427 | ||||||
| GPL14372_Probes_29428 | ||||||
| GPL14372_Probes_85478 | ||||||
| GPL14372_Probes_85479 | ||||||
| Microarray_results | GPL14372_Probes_29426 | |||||
| GPL14372_Probes_29427 | ||||||
| GPL14372_Probes_29428 | ||||||
| GPL14372_Probes_85478 | ||||||
| GPL14372_Probes_85479 | ||||||
| RNASeq_FPKM | WBls:0000032 | 2.85963 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 6.75492 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S245-3.50 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
