WormBase Tree Display for CDS: PPA23971
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| PPA23971 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (52) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S245-6.37 | ||
| TREEFAM | TREEFAM_ID | TF317521 | ||||
| DB_remark | contains similarity to Pfam domains PF00076 (RNA recognition motif), PF05254 (Uncharacterised protein family (UPF0203)), PF09748 (Transcription factor subunit Med10 of Mediator complex), PF13516 (Leucine Rich repeat); contains similarity to Interpro domains IPR001611 (Leucine-rich repeat), IPR035979 (RNA-binding domain superfamily), IPR019145 (Mediator complex, subunit Med10), IPR007918 (Mitochondrial distribution/morphology family 35/apoptosis), IPR006553 (Leucine-rich repeat, cysteine-containing subtype), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR036249 (Thioredoxin-like superfamily), IPR032675 (Leucine-rich repeat domain superfamily), IPR000504 (RNA recognition motif domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00113525 | ||||
| Corresponding_transcript | PPA23971.1 | |||||
| Corresponding_protein | PP52512 | |||||
| Corresponding_oligo_set (17) | ||||||
| Microarray_results (17) | ||||||
| RNASeq_FPKM | WBls:0000032 | 6.1814 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 32.4431 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S245-6.37 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
