WormBase Tree Display for CDS: PPA23980
expand all nodes | collapse all nodes | view schema
| PPA23980 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (44) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S245-6.39 | ||
| TREEFAM | TREEFAM_ID | TF105196 | ||||
| DB_remark | PPA-SKR-1 protein; contains similarity to Pfam domains PF00005 (ABC transporter), PF00664 (ABC transporter transmembrane region), PF01466 (Skp1 family, dimerisation domain), PF03931 (Skp1 family, tetramerisation domain); contains similarity to Interpro domains IPR001232 (S-phase kinase-associated protein 1-like), IPR011527 (ABC transporter type 1, transmembrane domain), IPR036296 (SKP1-like, dimerisation domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR039421 (Type 1 protein exporter), IPR003439 (ABC transporter-like, ATP-binding domain), IPR016072 (SKP1 component, dimerisation), IPR036640 (ABC transporter type 1, transmembrane domain superfamily), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR003593 (AAA+ ATPase domain), IPR016073 (SKP1 component, POZ domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00113534 | ||||
| Corresponding_transcript | PPA23980.1 | |||||
| Corresponding_protein | PP66117 | |||||
| Corresponding_oligo_set | GPL14372_Probes_29335 | |||||
| GPL14372_Probes_29336 | ||||||
| GPL14372_Probes_29337 | ||||||
| GPL14372_Probes_29338 | ||||||
| GPL14372_Probes_29339 | ||||||
| GPL14372_Probes_85323 | ||||||
| GPL14372_Probes_85324 | ||||||
| Matching_cDNA | AW181876 | Inferred_automatically | transcript_builder.pl | |||
| CN442821 | Inferred_automatically | transcript_builder.pl | ||||
| AA193716 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_29335 | |||||
| GPL14372_Probes_29336 | ||||||
| GPL14372_Probes_29337 | ||||||
| GPL14372_Probes_29338 | ||||||
| GPL14372_Probes_29339 | ||||||
| GPL14372_Probes_85323 | ||||||
| GPL14372_Probes_85324 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0.710389 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 22.6505 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S245-6.39 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
