WormBase Tree Display for CDS: PPA24089
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| PPA24089 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrII | |||
| Structure | Source_exons (18) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S10-78.0 | ||
| DB_remark | PPA-ARC-1 protein; contains similarity to Pfam domains PF00025 (ADP-ribosylation factor family), PF00643 (B-box zinc finger), PF14634 (zinc-RING finger domain); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR003649 (B-box, C-terminal), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR000315 (B-box-type zinc finger), IPR005225 (Small GTP-binding protein domain), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR006689 (Small GTPase superfamily, ARF/SAR type) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00113643 | ||||
| Corresponding_transcript | PPA24089.1 | |||||
| Corresponding_protein | PP74850 | |||||
| Corresponding_oligo_set | GPL14372_Probes_59040 | |||||
| GPL14372_Probes_59041 | ||||||
| GPL14372_Probes_59042 | ||||||
| Microarray_results | GPL14372_Probes_59040 | |||||
| GPL14372_Probes_59041 | ||||||
| GPL14372_Probes_59042 | ||||||
| RNASeq_FPKM | WBls:0000032 | 23.3798 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 19.3287 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 21 Feb 2019 09:53:56 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S10-78.0 | Curator_confirmed | WBPerson4055 | |||
| [190221 mh6] updated to the latest set provided my MPG | Curator_confirmed | WBPerson18244 | ||||
| Method | curated |
