WormBase Tree Display for CDS: PPA24122
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PPA24122 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 114 | |||
192 | 276 | |||||
475 | 574 | |||||
801 | 858 | |||||
924 | 1040 | |||||
1318 | 1380 | |||||
1491 | 1829 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S7-79.69 | ||
DB_remark | contains similarity to Pfam domain PF00178 (Ets-domain); contains similarity to Interpro domains IPR036390 (Winged helix DNA-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR000418 (Ets domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00113676 | ||||
Corresponding_transcript | PPA24122.1 | |||||
Corresponding_protein | PP14290 | |||||
Corresponding_oligo_set | GPL14372_Probes_13359 | |||||
GPL14372_Probes_13360 | ||||||
GPL14372_Probes_13361 | ||||||
GPL14372_Probes_13362 | ||||||
GPL14372_Probes_13363 | ||||||
Microarray_results | GPL14372_Probes_13359 | |||||
GPL14372_Probes_13360 | ||||||
GPL14372_Probes_13361 | ||||||
GPL14372_Probes_13362 | ||||||
GPL14372_Probes_13363 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S7-79.69 | Curator_confirmed | WBPerson4055 | |||
Method | curated |