WormBase Tree Display for CDS: PPA24476
expand all nodes | collapse all nodes | view schema
PPA24476 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 220 | |||
430 | 518 | |||||
592 | 660 | |||||
2626 | 2764 | |||||
3015 | 3081 | |||||
4016 | 4115 | |||||
4196 | 4304 | |||||
4402 | 4478 | |||||
4653 | 4730 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S196-14.39 | ||
DB_remark | PPA-SUP-12 protein; contains similarity to Pfam domain PF00076 (RNA recognition motif); contains similarity to Interpro domains IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR037366 (), IPR000504 (RNA recognition motif domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00114030 | ||||
Corresponding_transcript | PPA24476.1 | |||||
Corresponding_protein | PP52797 | |||||
Corresponding_oligo_set | GPL14372_Probes_51257 | |||||
GPL14372_Probes_7059 | ||||||
GPL14372_Probes_7060 | ||||||
Microarray_results | GPL14372_Probes_7059 | |||||
GPL14372_Probes_7060 | ||||||
GPL14372_Probes_51257 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S196-14.39 | Curator_confirmed | WBPerson4055 | |||
Method | curated |