WormBase Tree Display for CDS: PPA24921

PPA24921 SMap: S_parent: Sequence: PPA_ChrI
  Structure: Source_exons (36)
  DB_info: Database: pristionchus.org cds gene-UMA-S196-24.68
    DB_remark: contains similarity to Pfam domains PF00270 (DEAD/DEAH box helicase), PF00271 (Helicase conserved C-terminal domain), PF01704 (UTP--glucose-1-phosphate uridylyltransferase), PF04408 (Helicase associated domain (HA2), winged-helix), PF07717 (Oligonucleotide/oligosaccharide-binding (OB)-fold), PF07904 (Chromatin modification-related protein EAF7); contains similarity to Interpro domains IPR011545 (DEAD/DEAH box helicase domain), IPR007502 (Helicase-associated domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR029044 (Nucleotide-diphospho-sugar transferases), IPR001650 (Helicase, C-terminal domain-like), IPR012423 (Chromatin modification-related protein Eaf7/MRGBP), IPR011709 (DEAD-box helicase, OB fold), IPR003593 (AAA+ ATPase domain), IPR002618 (UDPGP family), IPR014001 (Helicase superfamily 1/2, ATP-binding domain)
  Origin: From_laboratory: RS
    Species: Pristionchus pacificus
  Properties: Coding: CDS
      CDS_predicted_by: pristionchus.org
      Prediction_status: Partially_confirmed
  Visible: Gene: WBGene00114475
    Corresponding_transcript: PPA24921.1
    Corresponding_protein: PP62882
    Corresponding_oligo_set: GPL14372_Probes_1242
      GPL14372_Probes_1243
      GPL14372_Probes_1244
      GPL14372_Probes_1245
      GPL14372_Probes_37115
    Microarray_results: GPL14372_Probes_1242
      GPL14372_Probes_1243
      GPL14372_Probes_1244
      GPL14372_Probes_1245
      GPL14372_Probes_37115
    RNASeq_FPKM: WBls:0000032 26.9775 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 51.9179 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Remark: [171116 mh6] renamed from gene-UMA-S196-24.68 Curator_confirmed: WBPerson4055
  Method: curated