WormBase Tree Display for CDS: PPA24922
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PPA24922 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 167 | |||
249 | 332 | |||||
892 | 952 | |||||
1098 | 1199 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S196-24.24 | ||
TREEFAM | TREEFAM_ID | TF314161 | ||||
DB_remark | PPA-SFTB-6 protein; contains similarity to Pfam domain PF00076 (RNA recognition motif); contains similarity to Interpro domains IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR000504 (RNA recognition motif domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00114476 | ||||
Corresponding_transcript | PPA24922.1 | |||||
Corresponding_protein | PP23298 | |||||
Corresponding_oligo_set | GPL14372_Probes_37103 | |||||
Matching_cDNA | AW052255 | Inferred_automatically | transcript_builder.pl | |||
FG101038 | Inferred_automatically | transcript_builder.pl | ||||
FG096687 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_37103 | |||||
RNASeq_FPKM | WBls:0000032 | 191.909 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 129.573 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S196-24.24 | Curator_confirmed | WBPerson4055 | |||
Method | curated |