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WormBase Tree Display for CDS: PPA24922

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Name Class

PPA24922SMapS_parentSequencePPA_ChrI
StructureSource_exons1167
249332
892952
10981199
DB_infoDatabasepristionchus.orgcdsgene-UMM-S196-24.24
TREEFAMTREEFAM_IDTF314161
DB_remarkPPA-SFTB-6 protein; contains similarity to Pfam domain PF00076 (RNA recognition motif); contains similarity to Interpro domains IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR000504 (RNA recognition motif domain)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusConfirmed
VisibleGeneWBGene00114476
Corresponding_transcriptPPA24922.1
Corresponding_proteinPP23298
Corresponding_oligo_setGPL14372_Probes_37103
Matching_cDNAAW052255Inferred_automaticallytranscript_builder.pl
FG101038Inferred_automaticallytranscript_builder.pl
FG096687Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_37103
RNASeq_FPKMWBls:0000032191.909From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:0000101129.573From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S196-24.24Curator_confirmedWBPerson4055
Methodcurated