WormBase Tree Display for CDS: PPA24933

PPA24933 SMap: S_parent: Sequence: PPA_ChrI
  Structure: Source_exons: 1 45
      113 232
      415 486
      559 621
      720 776
      857 938
      1037 1176
      1390 1473
      1577 1665
      1723 1801
  DB_info: Database: pristionchus.org cds gene-UMM-S196-23.32
      TREEFAM TREEFAM_ID TF106222
    DB_remark: PPA-PBS-2 protein; contains similarity to Pfam domains PF00227 (Proteasome subunit), PF12465 (Proteasome beta subunits C terminal); contains similarity to Interpro domains IPR001353 (Proteasome, subunit alpha/beta), IPR035216 (), IPR024689 (Proteasome beta subunit, C-terminal), IPR029055 (Nucleophile aminohydrolases, N-terminal), IPR000243 (Peptidase T1A, proteasome beta-subunit)
  Origin: From_laboratory: RS
    Species: Pristionchus pacificus
  Properties: Coding: CDS
      CDS_predicted_by: pristionchus.org
      Prediction_status: Predicted
  Visible: Gene: WBGene00114487
    Corresponding_transcript: PPA24933.1
    Corresponding_protein: PP17658
    Corresponding_oligo_set: GPL14372_Probes_37070
      GPL14372_Probes_37072
      GPL14372_Probes_37073
      GPL14372_Probes_37074
    Microarray_results: GPL14372_Probes_37070
      GPL14372_Probes_37072
      GPL14372_Probes_37073
      GPL14372_Probes_37074
    RNASeq_FPKM: WBls:0000032 118.207 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 12.142 From_analysis: RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Remark: [171116 mh6] renamed from gene-UMM-S196-23.32 Curator_confirmed: WBPerson4055
  Method: curated