WormBase Tree Display for CDS: PPA24937
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PPA24937 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (27) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S196-23.55 | ||
TREEFAM | TREEFAM_ID | TF300620 | ||||
DB_remark | contains similarity to Pfam domains PF00069 (Protein kinase domain), PF00270 (DEAD/DEAH box helicase), PF00271 (Helicase conserved C-terminal domain), PF12330 (Haspin like kinase domain); contains similarity to Interpro domains IPR011545 (DEAD/DEAH box helicase domain), IPR011009 (Protein kinase-like domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR037770 (Cyclin-dependent kinase 7), IPR001650 (Helicase, C-terminal domain-like), IPR000719 (Protein kinase domain), IPR014001 (Helicase superfamily 1/2, ATP-binding domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00114491 | ||||
Corresponding_transcript | PPA24937.1 | |||||
Corresponding_protein | PP68191 | |||||
Corresponding_oligo_set | GPL14372_Probes_37053 | |||||
GPL14372_Probes_37054 | ||||||
GPL14372_Probes_37056 | ||||||
GPL14372_Probes_37059 | ||||||
GPL14372_Probes_37060 | ||||||
GPL14372_Probes_37061 | ||||||
GPL14372_Probes_37062 | ||||||
Microarray_results | GPL14372_Probes_37053 | |||||
GPL14372_Probes_37054 | ||||||
GPL14372_Probes_37056 | ||||||
GPL14372_Probes_37059 | ||||||
GPL14372_Probes_37060 | ||||||
GPL14372_Probes_37061 | ||||||
GPL14372_Probes_37062 | ||||||
RNASeq_FPKM | WBls:0000032 | 1.32343 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 4.68877 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S196-23.55 | Curator_confirmed | WBPerson4055 | |||
Method | curated |