WormBase Tree Display for CDS: PPA24961
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PPA24961 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 111 | |||
429 | 533 | |||||
718 | 784 | |||||
910 | 1007 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S196-22.39 | ||
TREEFAM | TREEFAM_ID | TF300134 | ||||
DB_remark | PPA-PFN-3 protein; contains similarity to Pfam domain PF00235 (Profilin); contains similarity to Interpro domains IPR036140 (Profilin superfamily), IPR005455 (Profilin, eukaryotic type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00114515 | ||||
Corresponding_transcript | PPA24961.1 | |||||
Corresponding_protein | PP66381 | |||||
Corresponding_oligo_set | GPL14372_Probes_51480 | |||||
GPL14372_Probes_51481 | ||||||
Matching_cDNA | FG099573 | Inferred_automatically | transcript_builder.pl | |||
FG096432 | Inferred_automatically | transcript_builder.pl | ||||
FG098485 | Inferred_automatically | transcript_builder.pl | ||||
AW097622 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_51480 | |||||
GPL14372_Probes_51481 | ||||||
RNASeq_FPKM | WBls:0000032 | 163.771 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 9.67474 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S196-22.39 | Curator_confirmed | WBPerson4055 | |||
Method | curated |