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WormBase Tree Display for CDS: PPA24966

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Name Class

PPA24966SMapS_parentSequencePPA_ChrI
StructureSource_exons (20)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S196-22.43
TREEFAMTREEFAM_IDTF300659
DB_remarkPPA-RAGC-1 protein; contains similarity to Pfam domains PF00069 (Protein kinase domain), PF04670 (Gtr1/RagA G protein conserved region), PF12330 (Haspin like kinase domain); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR000719 (Protein kinase domain), IPR006762 (Gtr1/RagA G protein)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
End_not_found
VisibleGeneWBGene00114520
Corresponding_transcriptPPA24966.1
Corresponding_proteinPP54233
Corresponding_oligo_setGPL14372_Probes_51467
GPL14372_Probes_51468
GPL14372_Probes_51469
GPL14372_Probes_51470
GPL14372_Probes_51471
GPL14372_Probes_51472
GPL14372_Probes_51473
Matching_cDNAFG102365Inferred_automaticallytranscript_builder.pl
FE939552Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_51467
GPL14372_Probes_51468
GPL14372_Probes_51469
GPL14372_Probes_51470
GPL14372_Probes_51471
GPL14372_Probes_51472
GPL14372_Probes_51473
RNASeq_FPKMWBls:000003223.9082From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010131.7644From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMM-S196-22.43Curator_confirmedWBPerson4055
Methodcurated