WormBase Tree Display for CDS: PPA24966
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PPA24966 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (20) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S196-22.43 | ||
TREEFAM | TREEFAM_ID | TF300659 | ||||
DB_remark | PPA-RAGC-1 protein; contains similarity to Pfam domains PF00069 (Protein kinase domain), PF04670 (Gtr1/RagA G protein conserved region), PF12330 (Haspin like kinase domain); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR000719 (Protein kinase domain), IPR006762 (Gtr1/RagA G protein) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
End_not_found | ||||||
Visible | Gene | WBGene00114520 | ||||
Corresponding_transcript | PPA24966.1 | |||||
Corresponding_protein | PP54233 | |||||
Corresponding_oligo_set | GPL14372_Probes_51467 | |||||
GPL14372_Probes_51468 | ||||||
GPL14372_Probes_51469 | ||||||
GPL14372_Probes_51470 | ||||||
GPL14372_Probes_51471 | ||||||
GPL14372_Probes_51472 | ||||||
GPL14372_Probes_51473 | ||||||
Matching_cDNA | FG102365 | Inferred_automatically | transcript_builder.pl | |||
FE939552 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_51467 | |||||
GPL14372_Probes_51468 | ||||||
GPL14372_Probes_51469 | ||||||
GPL14372_Probes_51470 | ||||||
GPL14372_Probes_51471 | ||||||
GPL14372_Probes_51472 | ||||||
GPL14372_Probes_51473 | ||||||
RNASeq_FPKM | WBls:0000032 | 23.9082 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 31.7644 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S196-22.43 | Curator_confirmed | WBPerson4055 | |||
Method | curated |