WormBase Tree Display for CDS: PPA24968
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| PPA24968 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (35) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S196-22.47 | ||
| TREEFAM | TREEFAM_ID | TF315491 | ||||
| DB_remark | PPA-ADT-1 protein; contains similarity to Pfam domains PF00090 (Thrombospondin type 1 domain), PF01421 (Reprolysin (M12B) family zinc metalloprotease), PF01562 (Reprolysin family propeptide), PF17771 (ADAMTS cysteine-rich domain 2); contains similarity to Interpro domains IPR036383 (Thrombospondin type-1 (TSP1) repeat superfamily), IPR024079 (Metallopeptidase, catalytic domain superfamily), IPR002870 (Peptidase M12B, propeptide), IPR000884 (Thrombospondin type-1 (TSP1) repeat), IPR041645 (ADAMTS, cysteine-rich domain 2), IPR001590 (Peptidase M12B, ADAM/reprolysin) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00114522 | ||||
| Corresponding_transcript | PPA24968.1 | |||||
| Corresponding_protein | PP59030 | |||||
| Corresponding_oligo_set | GPL14372_Probes_51457 | |||||
| GPL14372_Probes_51458 | ||||||
| GPL14372_Probes_51459 | ||||||
| GPL14372_Probes_51461 | ||||||
| Microarray_results | GPL14372_Probes_51457 | |||||
| GPL14372_Probes_51458 | ||||||
| GPL14372_Probes_51459 | ||||||
| GPL14372_Probes_51461 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0.760576 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S196-22.47 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
