WormBase Tree Display for CDS: PPA24994
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| PPA24994 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (66) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S196-21.10 | ||
| DB_remark | contains similarity to Pfam domains PF00063 (Myosin head (motor domain)), PF00373 (FERM central domain), PF00612 (IQ calmodulin-binding motif), PF00784 (MyTH4 domain); contains similarity to Interpro domains IPR029071 (Ubiquitin-like domain superfamily), IPR014352 (FERM/acyl-CoA-binding protein superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR000857 (MyTH4 domain), IPR019748 (FERM central domain), IPR011993 (PH-like domain superfamily), IPR008989 (Myosin S1 fragment, N-terminal), IPR035963 (FERM superfamily, second domain), IPR036961 (Kinesin motor domain superfamily), IPR000048 (IQ motif, EF-hand binding site), IPR019749 (Band 4.1 domain), IPR001609 (Myosin head, motor domain), IPR038185 (MyTH4 domain superfamily) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Predicted | |||||
| Visible | Gene | WBGene00114548 | ||||
| Corresponding_transcript | PPA24994.1 | |||||
| Corresponding_protein | PP66580 | |||||
| Corresponding_oligo_set (11) | ||||||
| Microarray_results (11) | ||||||
| RNASeq_FPKM | WBls:0000032 | 1.59063 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 1.87837 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S196-21.10 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
