WormBase Tree Display for CDS: PPA24996
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PPA24996 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (13) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMS-S196-21.45 | ||
TREEFAM | TREEFAM_ID | TF300831 | ||||
DB_remark | contains similarity to Pfam domains PF01137 (RNA 3'-terminal phosphate cyclase), PF05189 (RNA 3'-terminal phosphate cyclase (RTC), insert domain); contains similarity to Interpro domains IPR013791 (RNA 3'-terminal phosphate cyclase, insert domain), IPR016443 (RNA 3'-terminal phosphate cyclase type 2), IPR036553 (RNA 3'-terminal phosphate cyclase, insert domain superfamily), IPR037136 (RNA 3'-terminal phosphate cyclase domain superfamily), IPR013792 (RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta), IPR023797 (RNA 3'-terminal phosphate cyclase domain), IPR000228 (RNA 3'-terminal phosphate cyclase) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00114550 | ||||
Corresponding_transcript | PPA24996.1 | |||||
Corresponding_protein | PP03304 | |||||
Corresponding_oligo_set | GPL14372_Probes_51384 | |||||
GPL14372_Probes_51385 | ||||||
GPL14372_Probes_51387 | ||||||
GPL14372_Probes_51388 | ||||||
Matching_cDNA | FG094940 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_51384 | |||||
GPL14372_Probes_51385 | ||||||
GPL14372_Probes_51387 | ||||||
GPL14372_Probes_51388 | ||||||
RNASeq_FPKM | WBls:0000032 | 33.7254 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 47.0753 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMS-S196-21.45 | Curator_confirmed | WBPerson4055 | |||
Method | curated |