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WormBase Tree Display for CDS: PPA24996

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Name Class

PPA24996SMapS_parentSequencePPA_ChrI
StructureSource_exons (13)
DB_infoDatabasepristionchus.orgcdsgene-UMS-S196-21.45
TREEFAMTREEFAM_IDTF300831
DB_remarkcontains similarity to Pfam domains PF01137 (RNA 3'-terminal phosphate cyclase), PF05189 (RNA 3'-terminal phosphate cyclase (RTC), insert domain); contains similarity to Interpro domains IPR013791 (RNA 3'-terminal phosphate cyclase, insert domain), IPR016443 (RNA 3'-terminal phosphate cyclase type 2), IPR036553 (RNA 3'-terminal phosphate cyclase, insert domain superfamily), IPR037136 (RNA 3'-terminal phosphate cyclase domain superfamily), IPR013792 (RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta), IPR023797 (RNA 3'-terminal phosphate cyclase domain), IPR000228 (RNA 3'-terminal phosphate cyclase)
OriginFrom_laboratoryRS
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00114550
Corresponding_transcriptPPA24996.1
Corresponding_proteinPP03304
Corresponding_oligo_setGPL14372_Probes_51384
GPL14372_Probes_51385
GPL14372_Probes_51387
GPL14372_Probes_51388
Matching_cDNAFG094940Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_51384
GPL14372_Probes_51385
GPL14372_Probes_51387
GPL14372_Probes_51388
RNASeq_FPKMWBls:000003233.7254From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010147.0753From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Remark[171116 mh6] renamed from gene-UMS-S196-21.45Curator_confirmedWBPerson4055
Methodcurated