WormBase Tree Display for CDS: PPA24999
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PPA24999 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons (17) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S196-21.18 | ||
TREEFAM | TREEFAM_ID | TF105897 | ||||
DB_remark | contains similarity to Pfam domains PF04427 (Brix domain), PF14813 (NADH dehydrogenase 1 beta subcomplex subunit 2); contains similarity to Interpro domains IPR007109 (Brix domain), IPR026627 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, animal type) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00114553 | ||||
Corresponding_transcript | PPA24999.1 | |||||
Corresponding_protein | PP61304 | |||||
Corresponding_oligo_set | GPL14372_Probes_51372 | |||||
GPL14372_Probes_51373 | ||||||
GPL14372_Probes_51375 | ||||||
GPL14372_Probes_51378 | ||||||
GPL14372_Probes_51379 | ||||||
GPL14372_Probes_51380 | ||||||
Matching_cDNA | FG102528 | Inferred_automatically | transcript_builder.pl | |||
FG105468 | Inferred_automatically | transcript_builder.pl | ||||
FE936373 | Inferred_automatically | transcript_builder.pl | ||||
FG104463 | Inferred_automatically | transcript_builder.pl | ||||
FE940648 | Inferred_automatically | transcript_builder.pl | ||||
FE936766 | Inferred_automatically | transcript_builder.pl | ||||
FG104337 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_51372 | |||||
GPL14372_Probes_51373 | ||||||
GPL14372_Probes_51375 | ||||||
GPL14372_Probes_51378 | ||||||
GPL14372_Probes_51379 | ||||||
GPL14372_Probes_51380 | ||||||
RNASeq_FPKM | WBls:0000032 | 77.4401 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 160.053 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMA-S196-21.18 | Curator_confirmed | WBPerson4055 | |||
Method | curated |