WormBase Tree Display for CDS: PPA25175
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PPA25175 | SMap | S_parent | Sequence | PPA_ChrII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (23) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S498-0.75 | ||
TREEFAM | TREEFAM_ID | TF317559 | ||||
DB_remark | contains similarity to Pfam domains PF01390 (SEA domain), PF01826 (Trypsin Inhibitor like cysteine rich domain), PF03351 (DOMON domain); contains similarity to Interpro domains IPR000082 (SEA domain), IPR000742 (EGF-like domain), IPR036364 (SEA domain superfamily), IPR005018 (DOMON domain), IPR002919 (Trypsin Inhibitor-like, cysteine rich domain), IPR036084 (Serine protease inhibitor-like superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00114729 | ||||
Corresponding_transcript | PPA25175.1 | |||||
Corresponding_protein | PP63532 | |||||
Corresponding_oligo_set | GPL14372_Probes_84352 | |||||
GPL14372_Probes_84353 | ||||||
GPL14372_Probes_84354 | ||||||
Microarray_results | GPL14372_Probes_84352 | |||||
GPL14372_Probes_84353 | ||||||
GPL14372_Probes_84354 | ||||||
RNASeq_FPKM | WBls:0000032 | 0.678169 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 2.40258 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S498-0.75 | Curator_confirmed | WBPerson4055 | |||
Method | curated |