WormBase Tree Display for CDS: PPA25192
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| PPA25192 | Evidence | Curator_confirmed | WBPerson4055 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | PPA_ChrII | |||
| Structure | Source_exons (12) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S387-0.23 | ||
| TREEFAM | TREEFAM_ID | TF316850 | ||||
| DB_remark | contains similarity to Pfam domains PF13181 (Tetratricopeptide repeat), PF13374 (Tetratricopeptide repeat); contains similarity to Interpro domains IPR019734 (Tetratricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR040395 (Tetratricopeptide repeat protein 19) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00114746 | ||||
| Corresponding_transcript | PPA25192.1 | |||||
| Corresponding_protein | PP74408 | |||||
| Corresponding_oligo_set | GPL14372_Probes_84277 | |||||
| GPL14372_Probes_84278 | ||||||
| GPL14372_Probes_84279 | ||||||
| GPL14372_Probes_84280 | ||||||
| Matching_cDNA | FG096189 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_84277 | |||||
| GPL14372_Probes_84278 | ||||||
| GPL14372_Probes_84279 | ||||||
| GPL14372_Probes_84280 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 20.3469 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Last_reviewed | 21 Feb 2019 09:54:21 | WBPerson4055 | ||||
| Remark | [171116 mh6] renamed from gene-UMM-S387-0.23 | Curator_confirmed | WBPerson4055 | |||
| [190221 mh6] updated to the latest set provided my MPG | Curator_confirmed | WBPerson18244 | ||||
| Method | curated |
