WormBase Tree Display for CDS: PPA25263
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| PPA25263 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (37) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S387-3.13 | ||
| TREEFAM | TREEFAM_ID | TF313007 | ||||
| DB_remark | PPA-ZYG-11 protein; contains similarity to Pfam domain PF02485 (Core-2/I-Branching enzyme); contains similarity to Interpro domains IPR011989 (Armadillo-like helical), IPR003406 (Glycosyl transferase, family 14), IPR032675 (Leucine-rich repeat domain superfamily), IPR016024 (Armadillo-type fold) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00114817 | ||||
| Corresponding_transcript | PPA25263.1 | |||||
| Corresponding_protein | PP72929 | |||||
| Corresponding_oligo_set | GPL14372_Probes_83961 | |||||
| GPL14372_Probes_83962 | ||||||
| GPL14372_Probes_83963 | ||||||
| GPL14372_Probes_83964 | ||||||
| GPL14372_Probes_83966 | ||||||
| GPL14372_Probes_83968 | ||||||
| GPL14372_Probes_83970 | ||||||
| Matching_cDNA | AI989085 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL14372_Probes_83961 | |||||
| GPL14372_Probes_83962 | ||||||
| GPL14372_Probes_83963 | ||||||
| GPL14372_Probes_83964 | ||||||
| GPL14372_Probes_83966 | ||||||
| GPL14372_Probes_83968 | ||||||
| GPL14372_Probes_83970 | ||||||
| RNASeq_FPKM | WBls:0000032 | 21.4722 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 3.38092 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S387-3.13 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
