WormBase Tree Display for CDS: PPA25270
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| PPA25270 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 276 | |||
| 320 | 464 | |||||
| 520 | 622 | |||||
| 684 | 790 | |||||
| 859 | 917 | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S387-3.24 | ||
| DB_remark | contains similarity to Pfam domain PF00076 (RNA recognition motif); contains similarity to Interpro domains IPR035979 (RNA-binding domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR000504 (RNA recognition motif domain) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00114824 | ||||
| Corresponding_transcript | PPA25270.1 | |||||
| Corresponding_protein | PP65219 | |||||
| Corresponding_oligo_set | GPL14372_Probes_83932 | |||||
| GPL14372_Probes_83933 | ||||||
| GPL14372_Probes_83934 | ||||||
| GPL14372_Probes_83936 | ||||||
| Matching_cDNA | FG100090 | Inferred_automatically | transcript_builder.pl | |||
| BQ087871 | Inferred_automatically | transcript_builder.pl | ||||
| BM812496 | Inferred_automatically | transcript_builder.pl | ||||
| BQ087814 | Inferred_automatically | transcript_builder.pl | ||||
| FG096010 | Inferred_automatically | transcript_builder.pl | ||||
| BM565684 | Inferred_automatically | transcript_builder.pl | ||||
| FG094976 | Inferred_automatically | transcript_builder.pl | ||||
| FG100451 | Inferred_automatically | transcript_builder.pl | ||||
| FG097077 | Inferred_automatically | transcript_builder.pl | ||||
| AI986582 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_83932 | |||||
| GPL14372_Probes_83933 | ||||||
| GPL14372_Probes_83934 | ||||||
| GPL14372_Probes_83936 | ||||||
| RNASeq_FPKM | WBls:0000032 | 21.0949 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 168.201 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S387-3.24 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
