WormBase Tree Display for CDS: PPA25306
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| PPA25306 | SMap | S_parent | Sequence | PPA_ChrII | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (12) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S387-5.87 | ||
| DB_remark | PPA-PLPP-1.1 protein; contains similarity to Pfam domain PF01569 (PAP2 superfamily); contains similarity to Interpro domains IPR036938 (Phosphatidic acid phosphatase type 2/haloperoxidase superfamily), IPR000326 (Phosphatidic acid phosphatase type 2/haloperoxidase), IPR043216 (Phosphatidate (PA) phosphatase-related) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00114860 | ||||
| Corresponding_transcript | PPA25306.1 | |||||
| Corresponding_protein | PP61695 | |||||
| Corresponding_oligo_set | GPL14372_Probes_83846 | |||||
| GPL14372_Probes_83847 | ||||||
| GPL14372_Probes_83848 | ||||||
| GPL14372_Probes_83849 | ||||||
| GPL14372_Probes_83850 | ||||||
| Matching_cDNA | BI500544 | Inferred_automatically | transcript_builder.pl | |||
| FG097574 | Inferred_automatically | transcript_builder.pl | ||||
| BQ087848 | Inferred_automatically | transcript_builder.pl | ||||
| BQ087962 | Inferred_automatically | transcript_builder.pl | ||||
| BQ087964 | Inferred_automatically | transcript_builder.pl | ||||
| BI500543 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_83846 | |||||
| GPL14372_Probes_83847 | ||||||
| GPL14372_Probes_83848 | ||||||
| GPL14372_Probes_83849 | ||||||
| GPL14372_Probes_83850 | ||||||
| RNASeq_FPKM | WBls:0000032 | 15.7177 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 18.5642 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S387-5.87 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
